Pentanucleotide Mass Finder
This applet finds oligonucleotide sequences that match an input m/z. The oligonucleotide can have up to 5 bases. The nucleotides can be in their hydrogen or alkali metal ion forms. Help

Deoxy-Mononucleotide Ions:
Monoisotopic mass

 baseNpN pN>ppNp

Parent Oligo:
Type:    5' terminal group:   3' terminal group:
Maximum Charge State :    Allow ion exchange

Search Ion Types:

Target ion m/z: +-

Results: (select a result to see its isotope pattern)
oligo_____Ion Type____M/Z_______

Ion Equivalences:
5' \\ 3'-OH-p
HO-d = w
b = y
d = y
a-B = w
p-b = wd = w
b = y

This material is based upon work supported by the National Science Foundation under Grant No. 0088307. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.

Colby College, T. W. Shattuck, 4/20/02