CH341 Assignments

C^h341

09/09/2009: Wednesday

Install Chime on your computer: Get Chime, The Chime installer files are also in the \\fileserver1\Academics\CHEM\CH341\Chime folder on the server.

Try out Chime on a molecule of the month: Anatoxin,

Reading : Ch 1.1-1.2

09/11/2009: Friday

Read Molecular Mechanics Tutorial, Introduction sections 1 and 3 (Force Fields and comparing structures): Reading : Due date 09/08/2009.

Print off and bring to lab MOE Molecular Mechanics Exercises, Chapters 1: Building and Minimizing, 2: Conformational Preference of Methylcyclohexane, and 3: Geometry (You don"t need to read them in advance) : Printing Due date 09/14/2009.

Homework to hand in: Handin 1, : Due date 09/18/2009.

Reading Ch 1.3

09/14/2009: Monday

Homework (not to hand in) Ch1: 1-5

The HIV protease file is: 1hsgCartoon.moe,

Homework (not to hand in): Ch1: 6,8,10,11

09/16/2009: Wednesday

Crystal violet kinetics data, for non-linear curve fitting.

09/25/2009: Friday

Reading Ch. 3.6; Ch. 4.1-2

Homework (not to hand in): Ch 3: 3,4,5,6,7,8,10,11,14

09/28/2009: Monday

Homework to hand in: Handin 3, : Due date 10/02/2009.

09/30/2009: Wednesday

Homework (not to hand in): Ch. 3: 19,20,21,22,25,30

Homework to hand in: Handin 4, : Due date 10/07/2009.

10/02/2009: Friday

Reading: Ch. 4.1-3

Homework (not to hand in): Ch 4:1-4,8,10,11,12

10/05/2009: Monday

Reading: Ch 4.4-5, Ch 5.1

For practice tests you can also use the Finals: 2005: Part 1 problems 1,2,8 Part 2 problems 6,8. 2004: Part 1 problems 2,3,6 and Part 3 problem 6

The formula sheet for Test 1: Formula Sheet 1,

Homework (not to hand in): Ch. 4: 16,18,19

10/07/2009: Wednesday

Handin due

10/08/2009: Thursday

Question and Answer session: Keyes 102 7:00 pm

The answers to the practice test are here: Practice test 1 answers,

10/09/2009: Friday

Test 1 (PM) Chapters 1-4.3

Reading Ch. 5.1

Homework (not to hand in): Ch. 5: 1,3,4,5

10/14/2009: Wednesday

Reading: Ch. 7

Homework to hand in: Handin 5, : Due date 10/16/2009.

10/16/2009: Friday

Print off and bring to lab: MOE Molecular Mechanics Exercises, Chapters 4, 6 (with Problems 6.1-6.3), 11, and 12. Printing : Due date 10/19/2009.

Reading Ch. 8.7-8.10 (for lab on Monday) Reading : Due date 10/19/2009.

Reading for lab on Monday/Tuesday: Molecular Mechanics Introduction, Section 4 (Minimization). Reading : Due date 10/19/2009.

Homework (not to hand in): Ch. 7: 1-5,8,10,11,13,18,20,22,23,27

Handin due

10/19/2009: Monday

Reading Ch. 8.1-8.5

Homework to hand in: Handin 6, : Due date 10/23/2009.

10/20/2009: Tuesday

The first kinetics labs need to be finished this Wednesday/Thursday

10/21/2009: Wednesday

Homework (not to hand in): Ch. 8: 3,5,7,9,12,13,17,22,26,27,31,33,34,36

Reading Ch. 8.6-8.11

10/23/2009: Friday

Homework (not to hand in): Ch.9: 1,3,4,5,8,14,15,16,18,21,26,28,30

Reading: Chapter 9

10/26/2009: Monday

Homework to hand in: Handin 7, : Due date 10/30/2009.

10/27/2009: Tuesday

Please use the following form to report your MOE results: MOE Report form (pdf), MOE Report form (.doc), : Due date 10/29/2009.

10/29/2009: Thursday

Lab due

10/30/2009: Friday

Reading: Ch 10.1, Ch. 11 p. 411, Ch. 12.1-12.4

Homework (not to hand in): Ch. 12: 2,3,5,6,9

11/02/2009: Monday

Homework to hand in: Handin 8, : Due date 11/06/2009.

11/04/2009: Wednesday

Homework (not to hand in): Ch. 12: 14,17,21,23

11/06/2009: Friday

Print out, read the Introduction, QSAR Introduction, and Design and QSAR sections in: CAMD Tutorial, We will do "QSAR of Antitumor Activity in Aziridinyl Benzoquinones" and "Building a Receptor Model" in Lab. Reading- : Due date 11/09/2009.

Reading Ch 12.5-8; Ch. 13

Homework (not to hand in) Ch. 13: 2,8,9,10,13,14,15

For last year"s sample test: skip problems 2, 3, and 10 (we didn"t do Ch. 11 this year and we haven"t covered the temperature dependence of the entropy, yet)

11/09/2009: Monday

Homework to hand in: Handin 9, Due on Monday!!!! : Due date 11/16/2009.

Homework correction: Ch. 8 Problem 8, the boiling point of water is 373.2 K (oops)

11/11/2009: Wednesday

Calculus review session: Keyes 102 8:00 pm

Test covers 4.4 (pp149-155,160-161); 5.1 (pp170-174); 7; 8.1-8.11; 9; 10.1; 12; 13 (excluding pp 500)

The formula sheet is ready: Test 2 formula sheet,

The answers to the practice test are here: Practice Test 2 answers, The answers to the older Practice Test 1 are on reserve in the Science Library

11/12/2009: Thursday

Test review session: Keyes 102 8:00 pm

11/13/2009: Friday

Reading: Ch. 14 and 15

Homework (not to handin): Ch. 14:1-10

11/16/2009: Monday

Reading: Ch. 16

Homework (not to hand in): Ch 15: 1-10

11/17/2009: Tuesday

Homework to hand in: Handin 10, but, just question 2! : Due date 11/20/2009.

11/18/2009: Wednesday

Reading: Ch. 17: Phase transitions,

You can skip the section in Ch 17: The Vapor Pressure of a Liquid Increases with Increasing Total Applied Pressure, p. 582.

11/20/2009: Friday

For the lab read: Molecular Mechanics Tutorial, Sections 5 (Dynamics) and 8 (Continum Solvation)-- Reading : Due date 11/23/2009.

For the lab: Read the Introductions to and bring to lab: Molecular Mechanics Exercises, Chapters 9 and 10: "Conformational Preference of Small Peptides" and "Dynamics in Small Peptides" and Chapter 13 "Henry"s Law and Gibbs Free Energy of Solvation,"--Reading : Due date 11/23/2009.

Homework (not to hand in): Ch. 17: 1-6

Homework (not to hand in): Ch 16: 1-10,12

11/23/2009: Monday

Lab due Lab due