Ch341



03/01/2013: Friday

Assign the chemical shifts in a terpene. Pick up your terpene (Monday or Tuesday)

03/04/2013: Monday

Homework to hand in:
Handin 4 (problem 4 only), Handin 5 (problem 1 only), : Due date 03/07/2013.


03/07/2013: Thursday

Handin due

09/05/2012: Wednesday

Reading: Chapter 1
Lucretius and
atomic theory,

09/07/2012: Friday

Read:
Molecular Mechanics Tutorial, Introduction sections 1 and 3 (Force Fields and comparing structures): Reading- : Due date 09/10/2012.

Print off and bring to lab Molecular Mechanics Exercises, Overview: HIV-Protease and Indinavir, Chapters 1: Building and Minimizing, 2: Conformational Preference of Methylcyclohexane, and 3: Geometry (You don"t need to read them in advance) : Printing Due date 09/10/2012.

Handin homework: Handin 1, : Due date 09/14/2012.

Homework (not to hand in): Ch. 1: 1-3,8,9,13,15,17,18,21,23,25

09/10/2012: Monday

Lab Assignments: error analysis homework, Least Squares Excel spreadsheet, MOE Exercises Questions for Chapt. 1.1,1.2,2.1,3.1-3.6 : Due date 09/19/2012.


09/12/2011: Wednesday

Reading: Chapter 2.1-2.4
Homework (not to hand in): Ch. 2: 2,3,4,6,8,9,11,13,14

09/14/2011: Friday

Reading: Chapter 2.5-2.8
Lab reading for Monday/Tuesday:
pKa of Methyl red,
Homework (not to hand in): Ch. 2:18,19,21,22,23,24,29,30

09/16/2012: Sunday

Calculus review: 7:00-8:00 Keyes 102

09/17/2012: Monday

Homework to handin:
Handin 2: Due date 09/21/2012.


09/19/2012: Wednesday

Reading: Chapter 3.

09/21/2012: Friday

Homework (not to hand in): Ch. 3: 3,4,5,6,7,8,10,11,14,19,20,21,22,25,30

09/24/2012: Monday

Reading: Chapter 4.1-4.2
Handin Homework:
Handin 3, Handin3 Simulation,

09/26/2012: Wednesday

Reading: Chapter 4.2-4.4

09/30/2012: Sunday

Handin Homework: Reaction Mechanisms:
Handin 4, Due Wednesday : Due date 10/03/2012.


10/01/2012: Monday

Dr. Marc Rothenberg lecture:
The Perfect Teacher, Teaching Science in Antibellum America, Olin 1, 7:00 PM
Briggs-Rauscher Oscillating Clock Reaction,

10/03/2012: Wednesday

Handin due

10/04/2012: Thursday

Review session: 7:00 PM Keyes 102

10/05/2012: Friday

Test (PM): Chapters 1-4 (you can skip the subsection on predicting the reverse rate law from the forward rate law using detailed balance)

10/08/2012: Monday

Homework to hand in: Problems 2-4
Handin 5, (skip Problem 1) : Due date 10/12/2012.

Reading: Chapter 7

10/12/2012: Friday

Homework (not to hand in): Ch. 7: 1,2,4,5,6,7,8,10,11,13,18,20,22,23,27

10/17/2012: Wednesday

Homework to hand in:
Handin 6, Monday : Due date 10/22/2012.

Reading Chapter 8: Thermochemistry

10/19/2012: Friday

Homework (not to hand in): Ch. 8: 3,5,7,9,12,13,17,22,26,27,31,33,34,36

10/22/2012: Monday

Reading Chapter 9: Using the First Law
Homework (not to hand in): Ch. 9: 1,3,4,5,8,12,14,15,16,18,21,26,28,30
Homework to hand in:
Handin 7, : Due date 10/26/2012.


10/26/2012: Friday

Reading: Chapt. 10 section 1 only; Chapter 11
Homework (not to hand in): Ch. 10: 1,3,7,10,12,13,14 ; Ch. 11: 4,5,7,9,11
Reading for lab on Monday/Tuesday:
Molecular Mechanics Introduction, Section 4: Energy Minimization. Reading : Due date 10/29/2012.

Print off and bring to lab: MOE Molecular Mechanics Exercises, Chapters 4, 6 (with Problems 6.1-6.3), 11, and 12. Printing : Due date 10/29/2012.


10/29/2012: Monday

Lab: Remember to bring to lab the "Checklist for Molecular Mechanics Calculations" from the MOE Exercises handout Chapter 1.
Please use the following form to report your MOE results:
MOE report form (.pdf), MOE report form (.doc), Due date 11/(7 or 8)
Homework to hand in: Handin 8, problems 2-3 (skip Problem 1 and Problem 4 (problem 4 will be due next week)) : Due date 11/02/2012.


10/30/2012: Tuesday

Calculus review session II: 7:00 p.m. Keyes 102

10/31/2012: Wednesday

Reading: Chapter Section 10.3(only), Chapter 13
Homework (not to hand in): Ch. 13: 2,8,9,10,13,14,15

11/02/2012: Friday

For the practice tests: For the 2009 test skip questions 1,9, and 11. For the 2008 test, skip question 3.
Read the Introduction, QSAR Introduction, History, and "Design and QSAR" sections in:
Computer Aided Molecular Design Tutorial, (pp. 1-16). Print out "QSAR of Antitumor Activity in Aziridinyl Benzoquinones" and "Building a Receptor Model". Reading and Printing : Due date 11/05/2012.

Reading Chapter 14

11/05/2012: Monday

Homework to hand in:
Handin 9, by 5:30 p.m. : Due date 11/07/2012.

Homework (not to hand in): Ch. 14: 1,2,3,4,7,8,10,11,12,14
Lab assignment: Acetylcholine Esterase QSAR in Computer Aided Molecular Design Tutorial, pp. 21-28 [This assignment serves as the lab report for this week"s lab] : Due date 11/14/2012.


11/06/2012: Tuesday

The practice test answers are on reserve in the Science Library

11/07/2012: Wednesday

Handin due

11/12/2012: Monday

Homework to hand in:
Handin 10, : Due date 11/16/2012.


11/14/2012: Wednesday

Lab due

11/16/2012: Friday

For the lab read:
Molecular Mechanics Introduction, Section 5 (Dynamics) and textbook Sec. 19.5 [the same material is also in the Molecular Mechanics Tutorial Section 8, Continum Solvation]-- Reading : Due date 11/19/2012.

For the lab: Read the Introductions to and bring to lab: MOE Molecular Mechanics Exercises, Chapters 9 and 10: "Conformational Preference of Small Peptides" and "Dynamics in Small Peptides" and Chapter 13 "Henry"s Law and Gibbs Free Energy of Solvation,"--Reading : Due date 11/19/2012.

Handin due

11/19/2012: Monday

Reading: Chapter 18: Ideal Solutions
Home work (not to hand in): Ch. 18: 1,3,4,8,11,12,18,21,26,27,30,31,39(a,b,d,e,f,g)
Lab for next Monday/Tuesday:
Solubility of AgBrO3, You must prepare your samples before class on Monday or 8:30 on Tuesday (both partners must be present). If you don"t get your samples in by 8:30 then you will need to stay later during the afternoon
Generalized Born Solvation and Enzyme Action: Honig Lab (Columbia),

11/28/2012: Wednesday

Homework to hand in:
Handin 11, problems 2-3 (only) : Due date 11/30/2012.


11/30/2012: Friday

Handin due

12/03/2012: Monday

Reading: Chapter 19.1,4,5,7 (skip 19.2,3,6)
Homework (not to hand in): Ch. 19: 1,2,4,5,7,11,12,13,14,15,16,17
Homework to hand in:
Hand in 12, Problem 4 only

12/07/2012: Friday

Reading: Chapter 20.1-20.3 Chemical Equilibria
Homework (not to hand in):
Review Quizlet, (answers on reserve)

12/13/2012: Thursday

Review session: 7:00 p.m. Keyes 103

Legend:
Homework to hand in, Homework to do, but not hand in.