09/09/2015: Wednesday

Reading: Chapter 1
Lucretius and
atomic theory,

09/11/2015: Friday

Molecular Mechanics Tutorial, Introduction sections 1 and 3 (Force Fields and comparing structures)(also in our text Section 8.8): Reading Due date 09/14/2015.

Print off and bring to lab Molecular Mechanics Exercises, Overview: HIV-Protease and Indinavir, Chapters 1: Building and Minimizing, 2: Conformational Preference of Methylcyclohexane, and 3: Geometry (You don"t need to read them in advance) : Printing Due date 09/14/2015.

Handin homework: Handin 1, : Due date 09/18/2015.

Homework (not to hand in): Ch. 1: 1-3,8,9,13,15,17,18,21,23,25,26
Pressure in mbars: Atlantic Hurricane Analysis,

09/14/2015: Monday

Lab Assignments: error analysis homework, Least Squares Excel spreadsheet, MOE Exercises Questions for Chapt. 1.1,1.2,2.1,3.1-3.6 : Due date 09/23/2015.

09/16/2015: Wednesday

Reading: Chapter 2.1-2.4

09/17/2015: Thursday

Calculus Review: Keyes 102 7:00 pm
For a good review of spontaneous or equilibrium processes: Brown, Lemay, Bursten, "Chemistry the Central Science," Section 19.1.
Lab report sheet:
MOE Exercises Ch. 1-3 report (pdf), or MOE Exercises Ch. 1-3 report (docx), : Due date 09/23/2015.

09/18/2015: Friday

Reading: Chapter 2
Lab for Monday:
pKa of Methyl Red,

09/21/2015: Monday

Handin homework:
Handin 2, : Due date 09/25/2015.

Homework (important but not to hand in): Ch. 2: 2,3,4,6,8,9,11,13,14,18,19,21,22,23,24,29,30

09/23/2015: Wednesday

Lab due

09/25/2015: Friday

Handin due

09/28/2015: Monday

Homework to hand in:
Handin 3, Handin 3 Kinetics Simulation Introduction, : Due date 10/01/2015.

Reading: Chapter 3
Homework not to hand in: Ch. 3: 3,4,5,6,7,8,10,11,14,19,20,21,22,25,30,33,36

10/02/2015: Friday

Home work to hand in:
Handin 4, (note earlier due date) : Due date 10/07/2015.

Reading: Chapter 4
Home work (not to hand in): Ch. 4: 1-4,10,13,14,15,19,25,27,29,30,33(but,not for this test),35

10/07/2015: Wednesday

Question and Answer session: 8:30 pm Keyes 102
Reading: Chapter 7 First Law of Thermodynamics

10/08/2015: Thursday

The formula sheet (1) that will be handed out at the test is on the Class Notes page:
Class Notes,
The answers to the practice tests are on the Sample Exam Page, and also on Reserve in the Science Library

10/09/2015: Friday

Test Chapters 1-4(pp. 125-143; 152-154)

10/14/2015: Wednesday

Handin homework:
Handin 5, : Due date 10/16/2015.

10/16/2015: Friday

Home work, not to hand in: Ch. 7: 1,2,4,5,6,7,8,10,11,13,18,20,22,23,27

10/19/2015: Monday

Home work to hand in:
Handin 6, : Due date 10/23/2015.

10/21/2015: Wednesday

Home work, not to hand in: Ch. 8: 3,5,7,9,12,13,17,22,26,27,31,33
Reading: Chapter 8

10/23/2015: Friday

Handin due

10/26/2015: Monday

Home work to hand in:
Handin 7, Problems 1, 2, and 4 (skip Problem 3) : Due date 10/30/2015.

Reading: Chapter 9

10/30/2015: Friday

Home work (not to hand in): Ch. 8: 34,36 and Ch. 9: 1,3,4,5,8,12,14,15,16,18,21,26,28,30
Reading: Chapter 10
Reading for lab on Monday/Tuesday:
Molecular Mechanics Introduction, , Section 4: Energy Minimization, Reading : Due date 11/02/2015.

Print off and bring to lab: MOE Molecular Mechanics Exercises, Chapters 4, 6 (with Problems 6.1-6.3), 11, and 12. Printing : Due date 11/02/2015.

Remember to bring to lab the "Checklist for Molecular Mechanics Calculations" from the MOE Exercises handout Chapter 1.

11/02/2015: Monday

Please use the following form to report your MOE results:
MOE Report Form (pdf), MOE Report Form (doc), : Due date 11/11/2015.

Home work to hand in: Handin 8, : Due date 11/06/2015.

Reading: Chapter 13
Home work not to hand in: Ch. 10: 1,2,3,5,7,10,12,13
File for today"s lab: MOE files,
Meet in Keyes 102

11/03/2015: Tuesday

Meet in Keyes 102

11/04/2015: Wednesday

For the practice test from 2009, problems 1, 9, and 11 are from Chapter 12. Skip these problems.
For the practice test from 2008, problem 2 is from Chapter 11. Skip this problem.
Home work not to hand in: Ch. 13: 2,8,9,10,13(1.00 mole),14,15,18,20,23,24

11/06/2015: Friday

Read the Introduction, QSAR Introduction, History, and "Design and QSAR" sections in:
Computer Aided Molecular Design Tutorial, (pp. 1-16). Reading : Due date 11/09/2015.
Print out "QSAR of Antitumor Activity in Aziridinyl Benzoquinones" and "Building a Receptor Model" in the CAMD Tutorial. Printing : Due date 11/09/2015.
Reading: Chapter 14
Home work not to hand in: Ch. 14: 1,2,3,4,7,8,10,11,12,14

11/08/2015: Sunday

Calculus review workshop: Partial Derivative Conversions 4:00 pm Keyes 102
Home work to hand in:
Handin 9, (note the Wednesday afternoon due date- so I can get them graded in time to help study for the test.) : Due date 11/11/2015.

11/09/2015: Monday

Lab assignment: Acetylcholine Esterase QSAR in
Comptuer Aided Molecular Design Tutorial, pp. 21-28 [This assignment serves as the lab report for this week’s lab] : Due 11/18(Monday lab) or 11/19(Tuesday lab)

11/11/2015: Wednesday

Review Session 7:30 pm Keyes 102

11/13/2015: Friday

Test (pm): Chapters 7-10,13,14,15.1
Reading: Chapter 15

11/16/2015: Monday

Home work to hand in:
Handin 10, : Due date 11/20/2015.

Reading: Chapter 16
Homework (not to hand in): Ch. 15: 2,3,5,6,11,13,15,18,20,24,26,28,31

11/18/2015: Wednesday

Homework (not to hand in): Ch. 16: 2,8,12,14,15,17,18,19,23,28,35,36,38

11/20/2015: Friday

Homework (not to hand in): Ch. 17: 2,3,4,6,10,11,12,16,17,24
Reading: Chapt. 18
For the lab read:
Molecular Mechanics Introduction Tutorial, Section 5 (Dynamics) and textbook Sec. 19.5 [the same material is also in the Molecular Mechanics Tutorial Section 8, Continuum Solvation]-- Reading Due 11/23 or 11/24/2015
For the lab: Read the Introductions to and bring to lab: MOE Molecular Mechanics Exercises, Chapters 9 and 10: "Conformational Preference of Small Peptides" and "Dynamics in Small Peptides" and Chapter 13 "Henry"s Law and Gibbs Free Energy of Solvation,"--Reading and Printing Due 11/23 or 11/24/2015

11/23/2015: Monday

DelPhi continuum electrostatic solvation
Barry Honig"s Lab at Columbia,
Electrostatic Surface for nicotinic agonist,

11/25/2015: Wednesday

Lab for next Monday/Tuesday:
Solubility of AgBrO3, You must prepare your samples before class on Monday or 8:30 on Tuesday (both partners must be present). If you don"t get your samples in by 8:30 then you will need to stay later during the afternoon.

11/30/2015: Monday

Don"t forget to prepare your samples before class!
Home work to hand in:
Handin 11, : Due date 12/04/2015.

12/01/2015: Tuesday

Don"t forget to prepare your samples before 8:30 am.

12/04/2015: Friday

Handin due

Homework to hand in, Homework to do, but not hand in.