Ch341

09/08/2010: Wednesday

PC Users (optional): Install Chime on your computer:
Install Chime, (Chime is a 3D molecule viewer)

If you installed Chime, to test your installation: Take a look at molecule of the month: nitrogen triiodide
Reading: Chapter 1


09/10/2010: Friday

Read:
Molecular Mechanics Tutorial, Introduction sections 1 and 3 (Force Fields and comparing structures): Reading- : Due date 09/13/2010.

Print off and bring to lab Molecular Mechanics Exercises, Overview: HIV-Protease and Indinavir, Chapters 1: Building and Minimizing, 2: Conformational Preference of Methylcyclohexane, and 3: Geometry (You don"t need to read them in advance) : Printing- : Due date 09/13/2010.

Handin homework: Handin 1, : Due date 09/17/2010.

An interesting article on study skills: New York Times,

09/13/2010: Monday

Lab Assignments: error analysis homework, Least Squares Excel spreadsheet, MOE Exercises Questions for Chapt. 1.1,1.2,2.1,3.1-3.6 : Due date 09/22/2010.

Lab due Lab due

09/15/2010: Wednesday

Reading: Chapter 2.1-2.4
Homework (not to hand in): Ch. 2: 2,3,4,6,8,9,11,13,14

09/17/2010: Friday

Reading: Chapter 2.5-2.8
Handin homework:
Handin 2, : Due date 09/24/2010.


09/20/2010: Monday

Reading: Chapter 3.1-3.5
Homework (not to hand in): Ch. 2: 18,19,21,22,23,24,29,30

09/22/2010: Wednesday

Calculus Review Session: 7:00 pm Keyes 102
Homework (not to hand in): Ch. 3: 3,4,5,6,7,8,10,11,14,19

09/24/2010: Friday

Reading: Ch. 3.6, Ch. 4.1
Handin homework:
Handin 3, : Due date 10/01/2010.

Homework (not to hand in): Ch. 3: 20,21,22,25,30
Crystal Violet data, curve fitting example
Non-linear least squares curve fitting applet,

09/27/2010: Monday

Reading: Chapter 4.1-4.2

10/01/2010: Friday

Reading: Ch. 4.3-4.4, 5.1
Homework (not to hand in): Ch. 4: 1-4,8,10,11,12,16,18,19
Hand in homework:
Handin 4, Due: Wednesday- : Due date 10/06/2010.

Homework (not to hand in): Ch. 5: 1,3,4,5

10/04/2010: Monday

Reading: Ch. 7.1-7.3
Reading on oscillating reactions:
CH 22 Non-equilibrium Thermodynamics,

10/06/2010: Wednesday

Review session: 7:00 pm Keyes 102

10/08/2010: Friday

Test (pm): Ch.1 - Ch. 5.1 page 174

10/13/2010: Wednesday

Reading Chapter 7.4-7.9
Homework (not to hand in): Chapt 5: 7,8; Chapt 7: 1-5
Homework to hand in:
Handin 5, : Due date 10/15/2010.


10/15/2010: Friday

Handin due

10/18/2010: Monday

Reading: Chapter 5.11-5.11; 7.1-7.5
Homework (not to hand in): Chapter 7: 8,10,11,13,18,20,22,23,27
Hand in homework:
Handin 6,

10/20/2010: Wednesday

Reading: Ch. 7.6-7.11, 8.1-8.6
Homework (not to hand in): Ch. 8: 3,5,7,9,12,13,17,22,36

10/22/2010: Friday

Homework to hand in:
Handin 7, : Due date 10/29/2010.

Homework (not to hand in): Ch. 8: 26,27,31,34,36
Reading: Ch. 8.7-8.9, 8.11; 9.1-9.5

10/25/2010: Monday

Homework (not to hand in): Ch. 9: 1,3,4,5,8,12

10/27/2010: Wednesday

Homework (not to hand in): Ch. 9: 14,15,16,18,21,26,28,30

10/28/2010: Thursday

Calculus review: 7:00 pm Keyes 102

10/29/2010: Friday

Print off and bring to lab:
MOE Molecular Mechanics Exercises, Chapters 4, 6 (with Problems 6.1-6.3), 11, and 12. Printing Due date 11/01/2010.

Reading Ch. 8.7-8.10 (for lab on Monday) Reading Due date 11/1/2010
Reading for lab on Monday/Tuesday: Molecular Mechanics Introduction, Section 4: Energy Minimization, Reading Due date 11/01/2010.

Reading: Chapter 10.1, Chapter 11

11/01/2010: Monday

Please use the following form to report your MOE results:
MOE Report form (pdf), MOE Report form (.doc) : Due date 11/(10 or 11)/2010.

MM3 atom type list: MM3 atoms types,
Homework (not to hand in): Ch. 11: 4,5,7,9,11;
Handin Homework: Handin 8, : Due date 11/05/2010.


11/03/2010: Wednesday

Reading Chapter 10.3 and 13.1-13.5
Homework (not to hand in): Ch. 10: 1,3,5,7,10,12,13,14

11/05/2010: Friday

Homework (not to hand in): Ch. 13: 2,8,9,10,13,14,15
Print out, read the Introduction, QSAR Introduction, Histroy, and "Design and QSAR" sections in:
Computer Aided Molecular Design Tutorial, (pp. 1-16). We will do "QSAR of Antitumor Activity in Aziridinyl Benzoquinones" and "Building a Receptor Model" in Lab. Reading : Due date 11/08/2010.

Reading Chapter 14

11/08/2010: Monday

Reading Chapter 15
Homework (not to hand in): Ch. 14: 4,5,8,10 (all 1-10 are good for practice and not too time consuming)
For the practice test from 2009, problems 1, 9, and 11 are from Chapter 12. Skip these problems.
The answers to the practice tests are on reserve in the Science Library

11/10/2010: Wednesday

Review session 6:30 pm Keyes 102

11/12/2010: Friday

Test (PM): CH. 7-9,10.1,10.3,11,13,14

11/15/2010: Monday

Reading Chapter 16

11/17/2010: Wednesday

Homework (not to hand in): Ch. 15: 1-10 ; Ch. 16: 1-10,12

11/19/2010: Friday

Homework to hand in:
Handin 10, : Due date 12/03/2010.

Reading Chapter 17
Homework (not to hand in): Ch. 17: 2-6,8

11/22/2010: Monday

Lab for next Monday/Tuesday:
Solubility of AgBrO3, You must prepare your samples before class on Monday or 8:30 on Tuesday (both partners must be present). If you don"t get your samples in by 8:30 then you will need to stay later during the afternoon.
Reading: Ideal Solutions Chapter 18

11/29/2010: Monday

Hand in homework:
Handin 10, Handin 10 part 2, : Due date 12/03/2010.

Lab report (short form-phase transitions, solutions) : Due date 12/06/2010.


12/01/2010: Wednesday

Reading: Chapter 18 sections 18.4-18.6
Homework (not to hand in): Chapter 18: 1,3,4,8,11,12,18,21,25,26,29,30
Section 18.5 (Gibbs phase rule) will not be covered on the final

12/03/2010: Friday

Handin due Handin due

12/06/2010: Monday


Reading Chapter 19.1; 19.4 Real Solutions
Homework (not to hand in): Ch. 19: 1,2,4,5,7,11,12,13,14,15,16,17
Homework to hand in:
Handin 11, : Due date 12/10/2010.

Homework: Here is the correct question for Chapter 17 Problem 1: Problem 17.1 erratum,

12/09/2010: Thursday


12/10/2010: Friday

Reading Ch. 20.1-20.4
Homework (not to hand in): Ch. 20: 1-6,8,9,14,22,35a,35b,35e,35f,38
Sections Ch. 20.4-20.6 will not be covered on the final
Chapter sections 19.2, 19.3, 19.5 and 19.6 will not be covered on the final

12/18/2010: Saturday

Review Session: Keyes102, 7:00 PM
Review Quiz Answers,