Ch341

### 09/08/2010: Wednesday

PC Users (optional): Install Chime on your computer:
Install Chime, (Chime is a 3D molecule viewer)

If you installed Chime, to test your installation: Take a look at molecule of the month: nitrogen triiodide

### 09/10/2010: Friday

Molecular Mechanics Tutorial, Introduction sections 1 and 3 (Force Fields and comparing structures): Reading- : Due date 09/13/2010.

Print off and bring to lab Molecular Mechanics Exercises, Overview: HIV-Protease and Indinavir, Chapters 1: Building and Minimizing, 2: Conformational Preference of Methylcyclohexane, and 3: Geometry (You don"t need to read them in advance) : Printing- : Due date 09/13/2010.

Handin homework: Handin 1, : Due date 09/17/2010.

An interesting article on study skills: New York Times,

### 09/13/2010: Monday

Lab Assignments: error analysis homework, Least Squares Excel spreadsheet, MOE Exercises Questions for Chapt. 1.1,1.2,2.1,3.1-3.6 : Due date 09/22/2010.

Lab due Lab due

### 09/15/2010: Wednesday

Homework (not to hand in): Ch. 2: 2,3,4,6,8,9,11,13,14

### 09/17/2010: Friday

Handin homework:
Handin 2, : Due date 09/24/2010.

### 09/20/2010: Monday

Homework (not to hand in): Ch. 2: 18,19,21,22,23,24,29,30

### 09/22/2010: Wednesday

Calculus Review Session: 7:00 pm Keyes 102
Homework (not to hand in): Ch. 3: 3,4,5,6,7,8,10,11,14,19

### 09/24/2010: Friday

Handin homework:
Handin 3, : Due date 10/01/2010.

Homework (not to hand in): Ch. 3: 20,21,22,25,30
Crystal Violet data, curve fitting example
Non-linear least squares curve fitting applet,

### 10/01/2010: Friday

Homework (not to hand in): Ch. 4: 1-4,8,10,11,12,16,18,19
Hand in homework:
Handin 4, Due: Wednesday- : Due date 10/06/2010.

Homework (not to hand in): Ch. 5: 1,3,4,5

### 10/04/2010: Monday

CH 22 Non-equilibrium Thermodynamics,

### 10/06/2010: Wednesday

Review session: 7:00 pm Keyes 102

### 10/08/2010: Friday

Test (pm): Ch.1 - Ch. 5.1 page 174

### 10/13/2010: Wednesday

Homework (not to hand in): Chapt 5: 7,8; Chapt 7: 1-5
Homework to hand in:
Handin 5, : Due date 10/15/2010.

Handin due

### 10/18/2010: Monday

Homework (not to hand in): Chapter 7: 8,10,11,13,18,20,22,23,27
Hand in homework:
Handin 6,

### 10/20/2010: Wednesday

Homework (not to hand in): Ch. 8: 3,5,7,9,12,13,17,22,36

### 10/22/2010: Friday

Homework to hand in:
Handin 7, : Due date 10/29/2010.

Homework (not to hand in): Ch. 8: 26,27,31,34,36

### 10/25/2010: Monday

Homework (not to hand in): Ch. 9: 1,3,4,5,8,12

### 10/27/2010: Wednesday

Homework (not to hand in): Ch. 9: 14,15,16,18,21,26,28,30

### 10/28/2010: Thursday

Calculus review: 7:00 pm Keyes 102

### 10/29/2010: Friday

Print off and bring to lab:
MOE Molecular Mechanics Exercises, Chapters 4, 6 (with Problems 6.1-6.3), 11, and 12. Printing Due date 11/01/2010.

Reading for lab on Monday/Tuesday: Molecular Mechanics Introduction, Section 4: Energy Minimization, Reading Due date 11/01/2010.

### 11/01/2010: Monday

MOE Report form (pdf), MOE Report form (.doc) : Due date 11/(10 or 11)/2010.

MM3 atom type list: MM3 atoms types,
Homework (not to hand in): Ch. 11: 4,5,7,9,11;
Handin Homework: Handin 8, : Due date 11/05/2010.

### 11/03/2010: Wednesday

Homework (not to hand in): Ch. 10: 1,3,5,7,10,12,13,14

### 11/05/2010: Friday

Homework (not to hand in): Ch. 13: 2,8,9,10,13,14,15
Print out, read the Introduction, QSAR Introduction, Histroy, and "Design and QSAR" sections in:
Computer Aided Molecular Design Tutorial, (pp. 1-16). We will do "QSAR of Antitumor Activity in Aziridinyl Benzoquinones" and "Building a Receptor Model" in Lab. Reading : Due date 11/08/2010.

### 11/08/2010: Monday

Homework (not to hand in): Ch. 14: 4,5,8,10 (all 1-10 are good for practice and not too time consuming)
For the practice test from 2009, problems 1, 9, and 11 are from Chapter 12. Skip these problems.
The answers to the practice tests are on reserve in the Science Library

### 11/10/2010: Wednesday

Review session 6:30 pm Keyes 102

### 11/12/2010: Friday

Test (PM): CH. 7-9,10.1,10.3,11,13,14

### 11/17/2010: Wednesday

Homework (not to hand in): Ch. 15: 1-10 ; Ch. 16: 1-10,12

### 11/19/2010: Friday

Homework to hand in:
Handin 10, : Due date 12/03/2010.

Homework (not to hand in): Ch. 17: 2-6,8

### 11/22/2010: Monday

Lab for next Monday/Tuesday:
Solubility of AgBrO3, You must prepare your samples before class on Monday or 8:30 on Tuesday (both partners must be present). If you don"t get your samples in by 8:30 then you will need to stay later during the afternoon.

### 11/29/2010: Monday

Hand in homework:
Handin 10, Handin 10 part 2, : Due date 12/03/2010.

Lab report (short form-phase transitions, solutions) : Due date 12/06/2010.

### 12/01/2010: Wednesday

Homework (not to hand in): Chapter 18: 1,3,4,8,11,12,18,21,25,26,29,30
Section 18.5 (Gibbs phase rule) will not be covered on the final

### 12/03/2010: Friday

Handin due Handin due

### 12/06/2010: Monday

Reading Chapter 19.1; 19.4 Real Solutions
Homework (not to hand in): Ch. 19: 1,2,4,5,7,11,12,13,14,15,16,17
Homework to hand in:
Handin 11, : Due date 12/10/2010.

Homework: Here is the correct question for Chapter 17 Problem 1: Problem 17.1 erratum,