Ch341

### 02/23/2012: Thursday

Answers to Shattuck Ch. 24 problems are now on reserve

### 09/09/2011: Friday

Molecular Mechanics Tutorial, Introduction sections 1 and 3 (Force Fields and comparing structures): Reading- : Due date 09/12/2011.

Print off and bring to lab Molecular Mechanics Exercises, Overview: HIV-Protease and Indinavir, Chapters 1: Building and Minimizing, 2: Conformational Preference of Methylcyclohexane, and 3: Geometry (You don"t need to read them in advance) : Printing Due date 09/12/2011.

Handin homework: Handin 1, : Due date 09/16/2011.

An interesting article on study skills: New York Times,
Homework (not to hand in): Ch. 1: 1-3,8,9,13,15,17,18,21,23,25

### 09/12/2011: Monday

Lab Assignments: error analysis homework, Least Squares Excel spreadsheet, MOE Exercises Questions for Chapt. 1.1,1.2,2.1,3.1-3.6 : Due date 09/21/2011.

### 09/15/2011: Wednesday

Homework (not to hand in): Ch. 2: 2,3,4,6,8,9,11,13,14

### 09/16/2011: Friday

pKa of Methyl red,
Homework (not to hand in): Ch. 2:18,19,21,22,23,24,29,30

### 09/19/2011: Monday

Homework to hand in:
Handin 2, : Due date 09/23/2011.

### 09/23/2011: Friday

Homework (not to hand in): Ch. 3: 3,4,5,6,7,8,10,11,14,19,20,21,22,25,30

### 09/26/2011: Monday

Handin homework:
Handin 3 Kinetics, Handin 3 Kineitcs Simulation Introduction, : Due date 09/30/2011.

### 09/28/2011: Wednesday

Homework (not to hand in): Ch. 4: 1-4,10,13,15,18

### 09/29/2011: Thursday

Calculus Review: 7:00 pm Keyes 102

### 09/30/2011: Friday

Homework (not to hand in): Ch. 4: 22,23,25,27,28,30,33
Home work to hand in:
Handin 4, (Due on Wednesday) : Due date 10/05/2011.

### 10/05/2011: Wednesday

Problems Ch. 4: 22 and 23 won"t be covered on the first test. Section 4.4 and Pages 163-165 will not be covered on the first test.
Homework (not to hand in): Ch. 5: 1,3,4,5

### 10/06/2011: Thursday

Review Session: 7:00 pm Keyes 102 (questions and answers on last minute details and issues)

### 10/07/2011: Friday

Homework to hand in:
Hanin 5, : Due date 10/14/2011.

### 10/14/2011: Friday

Homework (not to hand in): Ch. 7: 1-5,8,10,11,13,18,20,22,23,27

### 10/17/2011: Monday

Homework (not to hand in): Ch. 8: 3,5,7,9,12,13,17,22
Homework to hand in:
Handin 6, : Due date 10/21/2011.

### 10/21/2011: Friday

Homework (not to hand in): Ch. 8:26,27,31,33,34,36

### 10/24/2011: Monday

Handin homework:
Handin 7, : Due date 10/28/2011.

Homework (not to hand in): Ch. 9: 1,3,4,5,8,12,14

### 10/26/2011: Wednesday

Homework (not to hand in): Ch. 9: 15,16,18,21,26,28,30

### 10/28/2011: Friday

Molecular Mechanics Introduction, Section 4: Energy Minimization, Reading Due date 10/31/2011.
Print off and bring to lab: MOE Molecular Mechanics Exercises, Chapters 4, 6 (with Problems 6.1-6.3), 11, and 12. Printing Due date 10/31/2011.

### 10/31/2011: Monday

Remember to bring to lab the "Checklist for Molecular Mechanics Calculations" from the MOE Exercises handout Chapter 1.
MOE Report form (pdf), MOE Report form (.doc) : Due date 11/(9 or 10).
Homework to hand in: Handin 8, : Due date 11/04/2011.

Homework (not to hand in): Ch. 10: 1,2,3,5,7,10,12,13,14

### 11/01/2011: Tuesday

Calculus review session Keyes 102 7:00 pm

### 11/02/2011: Wednesday

Reading: Ch. 13.4-13.8; Ch.14.1-14.2; Ch. 22.1
Homework (not to hand in): Ch. 13: 2,8,9,10,13,14,15 Ch. 22: 1,2,5
Homework to hand in:
Handin 9, Note Wednesday due date: : Due date 11/09/2011.

### 11/04/2011: Friday

Homework (not to hand in): Ch. 14: 1,2,3,4,7,8,10,11,12,14
Read the Introduction, QSAR Introduction, History, and "Design and QSAR" sections in:
Computer Aided Molecular Design Tutorial, (pp. 1-16). Print out "QSAR of Antitumor Activity in Aziridinyl Benzoquinones" and "Building a Receptor Model". Reading and Printing Due date 11/07/2011.

### 11/07/2011: Monday

Lab assignment: Acetylcholine Esterase QSAR in
Computer Aided Molecular Design Tutorial pp. 21-28 [This assignment serves as the lab report for this week"s lab] : Due date 11/16/2011.

For the practice test from 2009, problems 1, 9, and 11 are from Chapter 12. Skip these problems.
For the practice test from 2008, problem 2 is from Chapter 11. Problem 3 wasn"t covered in time for this test. Skip both problems.
Homework (not to hand in): Ch. 15: 2,3,5,6,11,13,15,18,20,24,26,28,31

### 11/09/2011: Wednesday

Reading: Chapter 16 Fundations of Thermodynamics

### 11/10/2011: Thursday

Review session: 7:00 pm Keyes 102 (questions and answers on last minute details and issues)

### 11/11/2011: Friday

Test (PM): Ch. 4.4, 5.1(181-184), 7-10, 13, 14, 22.1(only)
Reading: Ch. 17 Phase Transitions in Pure Substances: Ch. 17.1

### 11/14/2011: Monday

Homework to hand in:
Handin 10, : Due date 11/18/2011.

Homework (not to hand in): Ch. 16 Fundations of Thermodynamics Ch. 16: 2,8,12,14,15,17,18,23,28,35,36,38
Lab report (short form-phase transitions, solutions) : Due date 12/02/2011.

### 11/16/2011: Wednesday

Homework (not to hand in): Ch. 17: 2,3,4,6,10,11,12,16,17,24

### 11/18/2011: Friday

Molecular Mechanics Introduction Tutorial, Section 5 (Dynamics) and textbook Sec. 19.5 [the same material is also in the Molecular Mechanics Tutorial Section 8, Continum Solvation]-- Reading Due date 11/21/2011.
For the lab: Read the Introductions to and bring to lab: MOE Molecular Mechanics Exercises, Chapters 9 and 10: "Conformational Preference of Small Peptides" and "Dynamics in Small Peptides" and Chapter 13 "Henry"s Law and Gibbs Free Energy of Solvation,"--Reading : Due date 11/21/2011.

### 11/21/2011: Monday

Handin homework:
Handin 11, Phase transitions and Ideal Solutions : Due date 12/02/2011.

Home work (not to hand in): Ch. 18: 1,3,4,8,11,12,18,21,26,27,30,31,39(a,b,d,e,f,g)
Lab for next Monday/Tuesday: Solubility of AgBrO3, You must prepare your samples before class on Monday or 8:30 on Tuesday (both partners must be present). If you don"t get your samples in by 8:30 then you will need to stay later during the afternoon

### 11/28/2011: Monday

Lab for today and tomorrow:
Solubility of AgBrO3, You must prepare your samples before class on Monday or 8:30 on Tuesday (both partners must be present). If you don"t get your samples in by 8:30 then you will need to stay later during the afternoon

### 12/02/2011: Friday

Homework to hand in:
Handin 12, : Due date 12/09/2011.

### 12/05/2011: Monday

Home work (not to hand in): Ch. 19: 1,2,4,5,7,11,12,13,14,15,16,17

### 12/07/2011: Wednesday

Reading: Ch. 20.3, 21. 1 (skip Ch. 20.4-20.6)
Home work (not to hand in): Ch. 20: 1-6,8,9,14,22,35a,35b,35e,35f,38

### 12/09/2011: Friday

Reading: Ch. 21.1-21.3,21.5 (skip Ch 21.4, but if you are interested in biogeoenvironmental chemistry, the section is worthwhile)
Homework (not to hand in): Ch.21: 2-8

### 12/14/2011: Wednesday

review session: 7:00 PM Keyes 102

Legend:
Homework to hand in, Homework to do, but not hand in.